Hi Roger,
On 09 Apr 2014, at 14:55, Roger Rowlett wrote:
> [...] I don't know how sophisticated PyMols morphing command is, but some
> morphing programs simply do a linear interpolation between the starting and
> ending states, and that will lead to serious distortion of side chain and
> main
You can also do this locally on your own machine if you arrange to get
the CNS morph_dist.inp script. (You need CNS to run it, of course.) The
nice thing about this method is that it minimizes the structures of the
intermediate morphs into something sensible. I don't know how
sophisticated PyMo
Hi Jared,
On 09 Apr 2014, at 12:33, Sampson, Jared wrote:
> With incentive PyMOL version 1.6 or later, you can use `morph`. >From what I
> read at http://pymolwiki.org/index.php/Morph, you’ll need to put both
> conformations of the protein into one object, as different states.
ah, that statem
Alternatively you could try the Morph server in Gerstein's lab and then load
each intermediate structure into a separate state for animation purposes.
http://morph2.molmovdb.org/
HTH
Carsten
From: Sampson, Jared [mailto:jared.samp...@nyumc.org]
Sent: Wednesday, April 09, 2014 1
Hi Yeping -
With incentive PyMOL version 1.6 or later, you can use `morph`. From what I
read at http://pymolwiki.org/index.php/Morph, you’ll need to put both
conformations of the protein into one object, as different states. See
http://pymolwiki.org/index.php/Load for more info on that.
Chee
Dear all,If I have the structures representing two conformations of one
protein, then could I make a animation movie that shows how the protein
transforms from one conformation to the other conformation using pymol? Thanks.
Yeping Sun
Institute of Microbiology, Chinese Academy of Sciences
---
Hi Carsten and Jared,
Thanks very much for the tips.
Jared's method seems to be the solution. I just had to be careful with the step
of cleaning up the unwanted lines in GIMP!
Many thanks again both!
Kind regards,
Sid.
From: Sampson, Jared [mailto:jared.samp...@nyumc.org]
Sent: 08 April 2014
