Hi Ye and Jared,
there is also the "solvent_radius" setting:
PyMOL> set solvent_radius, 1.4
Cheers,
Thomas
On 14 Feb 2014, at 15:00, Sampson, Jared wrote:
> Hi Ye -
>
> The solvent excluded surface is the default surface representation in PyMOL.
> (Solvent accessible surface can also be ge
Hi Ye -
The solvent excluded surface is the default surface representation in PyMOL.
(Solvent accessible surface can also be generated using `set surface_solvent,
on`.) View the surface with:
show surface, myobj
You can modify van der Waals radii like this:
alter myobj, vdw=vdw*1.2
rebuild
Hello,
On 05/11/13 15:34, Jason Vertrees wrote:
> Hi Jerome,
>
> PyMOL doesn't yet handle cyclic peptides. It's an open case we hope to
> resolve soon.
PyMOL 1.7 seems to handle them partially:
I have just tried with 2ns4, the formally missing bond is present now (thanks a
lot),
but the ribbon
