Hi Ahmet,
On 22 Dec 2013, at 12:17, Ahmet yıldırım wrote:
> Pymol show them as a sticks but they are very similar. How can I color each
> residue with different colors?
if you have incentive PyMOL 1.6, you can use the spectrum command to color by
residue type:
PyMOL> spectrum resn
With older
this works for me when testing using PDB ID code 4GRV (and others). Can you
test this PDB ID with your setup to see if it works? The unknown variable here
is your pdb file, possibly something is odd about it or something might be
wrong with PyMOL as Thomas has indicated. If PDB ID code 4GRV w
Hello all,
I installed pymol from source to my mac. At first I can invoke pymol from
terminal without any problem. But after a few days, if I invoke pymol from
terminal the Tcl/Tk GUI does not show up any more.
Does anyone know about it? Thanks.
Li
--
Xue, Li
Post-doctoral Research Associate
C
Hi Ahmet,
could be a shader problem (missing support by your graphics driver). Try:
PyMOL> set cylinder_shader_ff_workaround
(see http://pymolwiki.org/index.php/Cylinder_shader_ff_workaround )
or:
PyMOL> set use_shaders, 0
Cheers,
Thomas
On 22 Dec 2013, at 00:39, Ahmet yıldırım wrote:
> D
