[PyMOL] extra bonds

2013-04-29 Thread Jianghai Zhu
Hi, In my trajectory movie, there are some minor distortions of some of the residues, but the sticks presentation in pymol seems fine. However, after I loaded the trajectory pdb file use discrete=1, extra bonds would be shown in sticks in those slightly distorted residues. Is there is way to

Re: [PyMOL] CentOS installation help

2013-04-29 Thread Roger Rowlett
Sounds like a permissions issue. Without more info, I'm not sure what your problem might be specifically, but this is how I install pymol on a central server that is shared via NFS as /usr/local/xtal: 1. copy pymol-1.5.0.x directory into desired shared location, e.g., /usr/local/xtal. I do t