Re: [PyMOL] Pymol in command mode - no output

2012-12-12 Thread Per Larsson
Hi Sorry for not following up on this, I got side-tracked by a bunch of other stuff. The problem still persists, unfortunately. I'm working on some visualization of volumetric data. My exact script is copied below. While this runs, and I see all the commands being printed on screen, the resul

Re: [PyMOL] what is an object colored ?

2012-12-12 Thread Jason Vertrees
Hi Jon, > ive been given a pse file.and i am trying to work out what color >an object is.. > >i used the command > > get cartoon_color, pT_A > > and got back > > get: cartoon_color = default in object pT_A You're right, that's not very helpful. This will get you the answe

[PyMOL] Installing pymol from source on OSX 10.8

2012-12-12 Thread Derek Ashley Thomas
Hey, I'm a long time user of macports, but recently I have decided to check out homebrew for a number of reasons. Currently there is no standard way to install pymol with this technique, but I thought it should be possible. I set out to install pymol from source without the MacPorts libraries that

[PyMOL] what is an object colored ?

2012-12-12 Thread Jonathan Grimes
ive been given a pse file.and i am trying to work out what color an object is.. i used the command get cartoon_color, pT_A and got back get: cartoon_color = default in object pT_A which could be more helpful. could i get some clues how best to dig this inform