Re: [PyMOL] Volume visualization

2012-10-25 Thread Jason Vertrees
Hi Per, > I am wondering whether the open-source build of pymol for OS X (10.7) comes > with the same volume-visualization capabilities as the incentive version > (1.5). Essentially I'm interested in being able to do the same thing as is > described here: http://pymol.org/volume_details > > Also,

[PyMOL] Volume visualization

2012-10-25 Thread Per Larsson
Dear pymol-users I am wondering whether the open-source build of pymol for OS X (10.7) comes with the same volume-visualization capabilities as the incentive version (1.5). Essentially I'm interested in being able to do the same thing as is described here: http://pymol.org/volume_details Also,

Re: [PyMOL] wire-mesh spheres?

2012-10-25 Thread Matthew Baumgartner
So, I did some coding last night and I came up with a fairly good looking, albeit a little slow, workaround for drawing wire mesh spheres. The code is below, the main function is make_mesh. It is a little rough, in that they get_neighbors function is quite naive, but it comes out looking ok and

Re: [PyMOL] wire-mesh spheres?

2012-10-25 Thread Jason Vertrees
Hi Matt, > So some brief background, I am writing a pymol plugin for displaying > pharmacophores queries from ZincPharmer ( http://zincpharmer.csb.pitt.edu/), > which is developed in my lab. Version 1 of my plugin is available here: > http://sourceforge.net/projects/pharmer/files/ under the name l