Hi Douglas,
You can do something as simple as this:
# fetch a protein
fetch 1ejg, async=0
# show as spheres
as spheres, n. CA
# set the vdw radii = some factor of the b-factor
alter n. CA, vdw=b/5
rebuild
Cheers,
-- Jason
On Tue, Jul 31, 2012 at 3:36 PM, Douglas Kojetin
wrote:
> Hi All,
Hi All,
I would like to set the sphere size for each Ca atom proportional to the
b-factor value (the larger the b-factor the larger the sphere size) and also
color the sphere based on the b-factor value. Is there an easy way to adjust
the sphere size according to b-factor value?
Thanks,
Doug
Hi everyone,
we are currently trying to do movies and are running into some problems
concerning the "auto interpolate" function of pymol. We realized that camera
and molecule positions are always interpolated back to the position of frame 1
at the end of the movie.
For example a 60 frame movie:
Hi Krisztina,
> [...] The only nag is how to convert atom IDs in i1 and i2 into
> atom names?
I usually first prepare an id-to-something map where I later on can look
up the desired atom properties (like the name).
from pymol import cmd, stored
stored.i2n = dict()
cmd.iterate('hcpl1 or hcpl2',
