Dear Christian,
thank you for infromation- I'll examine this software. In particular I'm
looking for possible modules for pymol because as I've found previously
it's a good visualisation of the surfaces wich have been already included
in PyMol.
2012/6/28 Christian Roth
>
>
> By the way, there
Dear James.
I found the hollow script and/or Castp quite useful for this. There exist also
a program called surfplot, from Roman Laskowski again. It is integrated in the
pdbsum interface and creates ther surfaces. You may look there for examples.
Another possibility is Voidoo from Uppsala.
By
I've obtained accademical licence on LigProt and I found that this
softwatre is most handfull in the 2d analysis of protein-ligand
interactions. Is it possible to integrate it into pymol what have been
done in case of Pose view ? )
By the way does anybody know any another intresting software or p
Martin,
Are you looking for a structure validator or a PDB file format validator?
Cheers,
-- Jason
On Wed, Jun 27, 2012 at 6:00 AM, Martin Hediger wrote:
> Dear PyMOL users
> Does anybody know a script to verify that a file contains valid a valid
> PDB formatted structure?
> The file extension
Hi Martin,
I might be missing something but a little more information might help as to
what you want to do. agreed, a file extension can be changed to anything but
viewing the text file should tell you the type (of coordinate file). If you are
doing this in batch mode then I guess a script woul
Hi,
What is the current status of Pymol with respect to O1P or OP1 atom labels in
nucleic acid ?
The current PDB convention is OP1 and OP2.
Is there an option in pymol to save the coordinates with this convention ?
Thanks,
Pascal
-
Pascal Auffinger
IBMC/CNRS
15 rue René Descartes
67084 Str
Dear PyMOL users
Does anybody know a script to verify that a file contains valid a valid
PDB formatted structure?
The file extension alone obviously does not provide sufficient validation.
Thanks for any feedback.
Martin
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