Re: [PyMOL] Visualisation of protein-ligand interactions in pymol

2012-06-25 Thread James Starlight
Hi Christian! As I understood that LigPlot is not free for accademical ussage isnt? By the way in that paper http://onlinelibrary.wiley.com.sci-hub.org/doi/10.1002/minf.201000167/pdf there is exhaustive comparison of three different packages for such 2D diagram generation. Have anybody used such

Re: [PyMOL] Visualisation of protein-ligand interactions in pymol

2012-06-25 Thread Christian Roth
Hi James, the program you can use for this is ligplot from Roman Laskowski at the EBI. the solvent accessability shading is done with the help of naccess. Best Regards Christian Am Dienstag 26 Juni 2012 08:07:07 schrieben Sie: > By the way > > in some papers I've seen 2D schematic diagrams

Re: [PyMOL] Visualisation of protein-ligand interactions in pymol

2012-06-25 Thread James Starlight
By the way in some papers I've seen 2D schematic diagrams of the protein-ligand interactions. The exapmle of such maps could be found here http://ars.els-cdn.com.sci-hub.org/content/image/1-s2.0-S0005273610001707-gr4.jpg Could you tell me examples of software wich could produce such maps? Tha