Christian,
Can you provide us with sample data?
Cheers,
-- Jason
On Mon, May 21, 2012 at 11:59 AM, Christian Roth
wrote:
> Dear all,
>
> I used Castp for a pocket analysis. If i displax a mesh I have a continous
> representation. If I use surface representation just parts are displayed,
> prob
Dear all,
I used Castp for a pocket analysis. If i displax a mesh I have a continous
representation. If I use surface representation just parts are displayed,
probably as a result that just parts of the aminoacids are used to define the
pocket, I guess. Is it possible to create a surface like
Hi Doran,
this is a python script, so you must load it with "run".
http://www.pymolwiki.org/index.php/Running_Scripts
Use the "get" command to query default values of settings:
PyMOL>get sculpt_vdw_vis_max
get: sculpt_vdw_vis_max = 0.3
So the complete procedure should look like this:
ru
Hi Thomas,
Thank you for your reply.
I tried running the show_bumps.py script I copied from PymolWiki using
@,however pymol gives me the following error :
NameError: name 'show_bumps' is not defined
How can I define it?
Also, do you know what are the values that sculpt_vdw_vis_max, mid and
min
Hi Arne,
this works for any kind of molecule.
Cheers,
Thomas
Arne Dieckmann wrote, On 05/20/12 22:56:
> Hi Thomas,
>
> is this a general purpose script or does it only work for proteins/amino
> acids?
>
>
> Cheers,
> Arne
>
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