Re: [PyMOL] Improved Plugin Manager

2012-05-05 Thread Marius Retegan
Maybe I'm doing something wrong... I started by cloning the code from github, set the PYTHONPATH variable to it, but it does not seem to be taken into account by Pymol. python import sys print sys.path python end ['', '/Applications/MacPyMOL.app/pymol/modules', '/Applications/MacPyMOL.app/Content

Re: [PyMOL] Improved Plugin Manager

2012-05-05 Thread Jason Vertrees
Hi Marius, The new plugin code was built and tested on Mac OS X before release. It worked just as well as on other platforms. Please let us know if you discover any issues. Cheers, -- Jason On Sat, May 5, 2012 at 4:49 AM, Marius Retegan wrote: > Hello, > > Was the plugin manager tested with t

Re: [PyMOL] Improved Plugin Manager

2012-05-05 Thread Thomas Holder
Hi Marius, on Mac I only tested open-source fink builds, which worked fine. Cheers, Thomas Marius Retegan wrote, On 05/05/12 10:49: > Hello, > > Was the plugin manager tested with the incentive builds on mac osx? Is > the setup procedure similar? > > Thank you > Marius -- Thomas Holder M

Re: [PyMOL] Having problem running: findSurfaceResidues.py

2012-05-05 Thread Thomas Holder
Hi Anasuya, instead of "python" you must type "run": PyMOL>run findSurfaceResidues.py PyMOL>findSurfaceResidues doShow=True, cutoff=2.5 That's all. Quick explanation what happend in your case: With the "python" command you start a multi-line python block in the PyMOL command line interpreter,

[PyMOL] Having problem running: findSurfaceResidues.py

2012-05-05 Thread Anasuya Dighe
Hi Pymol Users, I was trying to use the findSurfaceResidues.py script listed on PyMOLwiki (http://www.pymolwiki.org/index.php/FindSurfaceResidues), to find out which residues which are present on the surface of the protein. These are the steps I have followed: 1) Made a file called findSurfaceRes

Re: [PyMOL] Improved Plugin Manager

2012-05-05 Thread Marius Retegan
Hello, Was the plugin manager tested with the incentive builds on mac osx? Is the setup procedure similar? Thank you Marius On Wed, May 2, 2012 at 3:43 PM, Michael Banck wrote: > Hi, > > On Wed, May 02, 2012 at 09:39:59AM -0400, Jason Vertrees wrote: >> Thanks for this feedback. Since the ince