I've installed all of the packages for pymol-py27 with fink. And my
terminal went back to normal. Now what? How do I make PyMol an application?
On Thu, Mar 15, 2012 at 5:28 PM, Shane Neeley wrote:
> Thanks Guys I just had to self update fink.
>
>
> On Thu, Mar 15, 2012 at 4:46 PM, Shane Neeley wr
Thanks Guys I just had to self update fink.
On Thu, Mar 15, 2012 at 4:46 PM, Shane Neeley wrote:
> Hi, S.S. Thanks for your help. It says,
>
> Failed: no package found for specification 'pymol-py27'!
>
> null-b88d121ba616:~ chimpsarehungry$ fink list pymol
> Information about 312 packages read in
Try fink install pymol-py27
From: Shane Neeley
To: pymol-users@lists.sourceforge.net
Sent: Thursday, March 15, 2012 4:53 PM
Subject: [PyMOL] fink install pymol help
I installed Fink on my mac because apparently it has pymol as a port so that I
can down
I installed Fink on my mac because apparently it has pymol as a port so
that I can download a newer version.
According to this:
http://pymol.sourceforge.net/newman/user/S0120install.html
In terminal I type
sudo -s
apt-get *pymol install*
*
*
But it did not work. Do you know how I could install it
Hi Shane,
if you have a version 0.99 or older then there is no super command. That
old version also lacks other features which are required by that script.
So the only solution is to upgrade.
Cheers,
Thomas
On 03/15/2012 05:47 PM, Shane Neeley wrote:
> AttributeError: 'module' object has no
AttributeError: 'module' object has no attribute 'super'
I am trying to run color_by_mutation
http://www.pymolwiki.org/index.php/Color_By_Mutations
But I get that error. Maybe my version of Mac PyMol from 2006 doesn't have
that superimpose command? How do I fix this?
Thank you.
Shane
-
Hi Jason ,
Thanks for your email.
I tried this with script with around 50 pdbs - that would be around 200
objects in the final session present in 50 groups.
The proteins are all in the 14-18 kDa range and monomeric.
My async_builds is off
My auto_defer_builds is set at 500
I used two versions :
Hi Hari,
I've tried your script on hundreds of objects and it seems to work
fine for me. What version of PyMOL are you using?
Do you have the async_builds setting on? If so, set to what value?
What about the auto_defer_builds settings?
I wonder if your video card is out of memory.
Cheers,
-- J
