Shane,
The simplistic option is to use the shift key and drag your mouse across the
viewer window. With the sequence displayed this will select those residues in
view and highlight them also. This is the static option and I'm guessing not
quite what you may be after
Joel
Hi,
Does anyone know of a way to tell which amino acids are currently in view?
I am imagining something that highlights the the parts of the sequence that
are visible as you rotate the molecule around. It may be much more complex
than I am describing.
Shane
---
Hi Suhaila,
>From what I understand from the wiki, you have to have a match between
the PDB and the contact map. If your contact map was made on a
structure with multiple chains, all chains will be in there. If you
want to select a single chain, you have to extract that chain from
thhe PDB file, t
Hello guys,
Regarding the subject mentioned above, I'm wondering if PDB file has more than
one chain, will the generation of contact map using g_mdmat from Gromacs
still produce a map of all chains?
Don't I have a choice to choose one chain?
Refer the subject above for more details:
http://www
My friend helped me. It's OK now. Appreciate your reply.
Suhaila.
Date: Mon, 12 Mar 2012 08:43:53 +0100
Subject: Re: [PyMOL] FW: Installed Gromacs but generate contact map using
g_mdmat (Gromacs) still failed
From: tsje...@gmail.com
To: bell_beaut...@hotmail.com
CC: pymol-users@lists.sourceforge
Hi Suheila,
Are you running both pymol and gromacs on the virtual machine?
Are tge gromacs binaries installed in /usr/bin or /usr/local/bin or
otherwise globally available?
Cheers,
Tsjerk
On Mar 11, 2012 10:00 PM, "Suhaila Haji Mohd Hussin" <
bell_beaut...@hotmail.com> wrote:
The problem I'm
