Re: [PyMOL] how to select whole residues around an object?

2012-02-20 Thread Jose Borreguero
Whoohoo! it works like a charm. Thank you :D On Mon, Feb 20, 2012 at 2:41 PM, João Rodrigues wrote: > Use byres(). > > select neighbours, byres( chain A w. 4A of chain B) > > Cheers, > > João > -- Try before you buy =

Re: [PyMOL] how to select whole residues around an object?

2012-02-20 Thread João Rodrigues
Use byres(). select neighbours, byres( chain A w. 4A of chain B) Cheers, João -- Try before you buy = See our experts in action! The most comprehensive online learning library for Microsoft developers is just $99.99! Vis

[PyMOL] how to select whole residues around an object?

2012-02-20 Thread Jose Borreguero
Selection 'X around 4.0' selects all atoms within 4.0 of object/selection X. However, how do I select all residues within 4.0 of X? The condition I need is that if at least one atom of residue Y is within 4.0 of X, then all the atoms of Y are to be selected. How do I express this condition with the

Re: [PyMOL] v1.5.0.1: maps and sessions bug

2012-02-20 Thread Jason Vertrees
Hi Gianluigi, It didn't make sense for us to put the lights mode in the normal 3-button view/edit ring, so we removed it. To get the lights option either right-click on the mouse mode matrix or click Mouse > 3 Button Lights. Cheers, -- Jason On Mon, Feb 20, 2012 at 6:04 AM, Gianluigi Caltabiano

Re: [PyMOL] Missing residues in PDB

2012-02-20 Thread Андрей Гончар
I found a solution! With openbabel a pdb without residue names and numbers can be easily fixed: 1. babel file.pdb file.mol 2. babel file.mol file.pdb Et voila! Now you have a pdb with repaired residue names! 2012/1/31 Андрей Гончар : > Thanks! > > 2012/1/31 Thomas Holder : >> I put a script on th