Re: [PyMOL] PyMol 1.4 not running on Ubuntu Linux 11.10

2012-01-11 Thread John Ladasky
From:Pete Meyer To: John Ladasky Cc: "pymol-users@lists.sourceforge.net" Sent: Wednesday, January 11, 2012 10:09 AM Subject: Re: [PyMOL] PyMol 1.4 not running on Ubuntu Linux 11.10 Hi John, > > >I don't think you need a re-install.  My take on the problem is that using the >repositories i

Re: [PyMOL] First pre-release of new plugin architecture

2012-01-11 Thread Troels Emtekær Linnet
Hi Thomas. Again, GREAT work! You were right, about order of starting. I found that I could not have in ~.pymolrc.py *import sys,os* *sys.path.append('/home/tlinnet/Software/pymol')* *os.chdir('/home/tlinnet/pymol/')* but only this. Or pymol will choke on startup. *import sys,os* *sys.path.appen

Re: [PyMOL] First pre-release of new plugin architecture

2012-01-11 Thread Thomas Holder
Hi Troels, thanks a lot for the feedback. > 2) I cannot disable a installed plugin. > If i untick "Load on startup", the pymol command says: Plugin settings > saved! > But when I restart pymol, it still loads the plugin. > I do have to say, that I am running the subversion version of pymol Sett

Re: [PyMOL] PyMol 1.4 not running on Ubuntu Linux 11.10

2012-01-11 Thread Pete Meyer
Hi John, I don't think you need a re-install. My take on the problem is that using the repositories installs the pymol libraries to the system python (not sure offhand which that is for ubuntu 11.10). But pymol is apparently trying to start up with "/usr/bin/env python", which is picking up

Re: [PyMOL] First pre-release of new plugin architecture

2012-01-11 Thread Troels Emtekær Linnet
By the way, if it can help. I git cloned the repository to: home/tlinnet/Software/pymol/pymolplugins My ~.pymolrc looks like this: sys.path.append('/home/tlinnet/Software/pymol') import pymolplugins 2012/1/11 Troels Emtekær Linnet > Hi Thomas. > > Great work! > > That looks like a real hands

Re: [PyMOL] First pre-release of new plugin architecture

2012-01-11 Thread Troels Emtekær Linnet
Hi Thomas. Great work! That looks like a real handsome plugin. I succeded to get some of the scripts from the git repository to work out of the box. :-) And I love the "info box". But I see some funny behavior, which you probably are working on hard alreadt. 1) New "click boxes" open behind the

[PyMOL] 3D HDMI Videos

2012-01-11 Thread Joachim Reichelt
Hi, is there a known way to create 3D movies for DLP projectors using one of the known 3D formats for HDMI: Frame-Packing (1920 x 2205 / 2 HD pics + 35 pixel black) Top over Bottom (2x540x1920 or 2x720x1280) Side by Side (2x 960 x 1080 ) Only Frame packing will give full resolution on current pro

Re: [PyMOL] First pre-release of new plugin architecture

2012-01-11 Thread Jason Vertrees
Greetings, > I'm pleased to announce the first pre-release of the new plugin > architecture, which is part of my fellowship project (Warren L. DeLano > Memorial PyMOL Open-Source Fellowship, http://pymol.org/fellowship). > > Brave beta testers can fetch the code from > https://github.com/speleo3/p

Re: [PyMOL] PyMol 1.4 not running on Ubuntu Linux 11.10

2012-01-11 Thread Bernhard Kleine
Am Dienstag, den 10.01.2012, 23:54 -0800 schrieb John Ladasky: > Hi folks, > > > I just upgraded my Ubuntu Linux installation to 11.10. Of course, > this removes obsolete versions of applications. So I had to reinstall > PyMol. > > > The Ubuntu Linux 11.10 manifest states that PyMol 1.4.1 is

[PyMOL] First pre-release of new plugin architecture

2012-01-11 Thread Thomas Holder
Dear PyMOL community, I'm pleased to announce the first pre-release of the new plugin architecture, which is part of my fellowship project (Warren L. DeLano Memorial PyMOL Open-Source Fellowship, http://pymol.org/fellowship). Brave beta testers can fetch the code from https://github.com/speleo3