Hi Christian,
> I have a two chain protein and I want translat and rotate it using the
> commands translate and rotate. It is complicate to choose the rigth angel,
> because I cannot see the rotation axis. Is there a way to draw the axis system
> for the objects to see around which axis and how mu
Dear all,
I have a two chain protein and I want translat and rotate it using the
commands translate and rotate. It is complicate to choose the rigth angel,
because I cannot see the rotation axis. Is there a way to draw the axis system
for the objects to see around which axis and how much I must
Hi Martin,
The temporary namespace for an atom means that variables like 'resn'
can be used to refer to the attribute with that name on the atom
instance.
You are right that iterate is here used to iterate over a single atom.
That does seem a bit odd :p But it seems to be a more straightforward
w
In this example below (from Thomas), the method 'iterate' is used. The
function saves every amino acid of a structure to a separate file. First
of all, I'm not sure of how to understand the docs:
" "iterate" iterates over an expression within a temporary namespace for
each atom."
What does tem
Hi James,
most trivial manner:
as cartoon
show sticks, resn LEU+ILE+VAL
set cartoon_side_chain_helper
and eventually something like this:
show spheres, resn LEU+ILE+VAL and not name N+O+C
set sphere_transparency, 0.5
Cheers,
Thomas
On 11/28/2011 02:58 PM, James Starlight wrote:
> Another
Another question also linked with the non-covalent interaction.
In particular I wounder to know how i Could represent all hydrophobic ( Ley
Ile Val etc) sidechains in my proteins in most trivial manner? I'd like to
represent the hydrophobic core of the proteins made from those residues.
Thanks,
