Hi Jason,
A more difficult one (at least for me)
Pymol seems to write (through save command) nucleic acid residue names not
as suggested by PDB convention.
Here is an extract of a PDB file (any PDB file containing nucleic acid
residues shows the same try 100D for example)
ATOM 1 O5' C
Pascal,
Here you go (http://www.pymolwiki.org/index.php/Pdb_reformat_names_mode).
If anyone else has more information on that or other settings, please
feel free to update the wiki.
Cheers,
-- Jason
On Tue, May 17, 2011 at 11:17 AM, Pascal Auffinger
wrote:
> Hi,
> The pymol manual indicates:
Hi Pascal,
> Please can someone precise the syntax of:
> Set pdb_echo_tags, HEADER
set pdb_echo_tags, "HEADER, REMARK, ATOM, HETATM"
The syntax of the final field is just a quoted, comma-separated list
of PDB fields.
> It doesn't seem to work. What is expected is to save the HEADER lines
> alon
Hi,
The pymol manual indicates:
pdb_reformat_names_mode (integer: 0-4, default: 0) affects how and whether
or not PDB names are reformatted in order to attempt to meet alternate
conventions.
What are these four modes ? Is this working internally or does it have an
effect on saved files?
Thanks
Hi,
Please can someone precise the syntax of:
Set pdb_echo_tags, HEADER
Since there is no documentation for this, I am not really sure about what I
am doing.
It doesn't seem to work. What is expected is to save the HEADER lines
along with the pdb coordinates. Yet, when I save a PDB file the HEA
