Hi Wataru Kagawa,
The intensity of the colors depends on the values of the data and the
color ranges on the color ramp. In fact, in editing mode,
CTRL-dragging can control the upper/lower values of the ramp,
effecting the coloring. On top of that, you can assign colors to
different numerical val
Dear PyMOL users:
I recently used the APBS plugin (v1.3) to display the surface potential of a
protein. I noticed that the charged surfaces were much more lightly colored,
compared with the surface colors I have calculated in the past (maybe a year
ago?) on the same protein, using the same soft
Hi Alex,
PyMOL should only be limited by your RAM, not some internal soft limit
object count. Your objects look like they're falling into two
classes: "Acc" and "Don." You should use the "get_unused_name"
function to create unique names beginning with the given prefixes:
preAcc = "Acc"
preDon =
