Thanks Thomas and Tsjerk for pointing me back to the path...from my
quicksand and brambles where I knew I was off! Brilliant. Seems to be an
unfortunate habit I have in scripting where it's like "Why use a simple,
elegant one-liner when a mess of impenetrable hack-arounds would do?" I had
forgotten
You can try the attached patch. It fixes three issues:
* is_string() returns False in case of unicode filenames
* Python/Tk bug http://bugs.python.org/issue5712
* filenames containing whitespace
Christoph
On 1/23/2011 7:02 AM, wang_qi wrote:
Hello, everyone,
I have downloaded the pymol of vers
Hello, everyone,
I have downloaded the pymol of version 1.3. and installed it on windows XP
successfully. But when selecting "file-open" to load my file, it doesn't work
and displays that the file is unable to be opend. Dose anyone meet this
problem? Ana how how can i solve it?
Thanks.
Qi Wan
Hi Seth,
I think this one-liner will do the job for you:
print cmd.get_chains('polymer')
Cheers,
Thomas
Seth Harris wrote, On 01/23/11 10:04:
> Hi All,
>
> I am script-plowing through PDB files and extracting unique chain
> identifiers only for "polymers" using PyMOL's polymer selection. R
Oops... That should've been:
polychains = set([i.chain for i in cmd.get_model('polymer').atom])
Sorry for that. :p
Tsjerk
On Sun, Jan 23, 2011 at 10:32 AM, Tsjerk Wassenaar wrote:
> Hi Seth,
>
> So you just want to have all unique chain identifiers for the
> 'polymer' selection? Does the follo
Hi Seth,
So you just want to have all unique chain identifiers for the
'polymer' selection? Does the following give what you want?:
polychains = set([i.chain for i in cmd.get_model('polymer')])
Hope it helps,
Tsjerk
On Sun, Jan 23, 2011 at 10:04 AM, Seth Harris wrote:
> Hi All,
> I am script-
Hi All,
I am script-plowing through PDB files and extracting unique chain
identifiers only for "polymers" using PyMOL's polymer selection. Right now
my code is a kind of brute force thing like this:
cmd.create ("justpolys","polymer")
polymer_chains=[]
for a in cmd.index("justpolys"):
