[PyMOL] Reminder: Fourth annual CCP4 summer school in USA, at APS, June 7-15

2011-01-18 Thread Sanishvili, Ruslan
Dear Colleagues, This is a reminder that the on-line applications are being accepted for the 4th annual CCP4 summer school "From data collection to structure refinement and beyond", which will take place early June, 2011 at the APS near Chicago. There is no registration fee for the school.

Re: [PyMOL] Malformed Selection Error when Measuring Dihedral Angle with Measurement Wizard

2011-01-18 Thread Doug Renfrew
This worked great. Thanks for the speedy response. Doug - P. Douglas Renfrew Ph.D. Postdoctoral Fellow Center for Genomics and Systems Biology Department of Biology New York University - On Tue, Jan 18, 2011

Re: [PyMOL] Rendering issues with education version 1.3

2011-01-18 Thread Paul Rigor
Thanks!! -- Paul Rigor http://www.ics.uci.edu/~prigor On Tue, Jan 18, 2011 at 6:47 AM, Robert Campbell wrote: > Hi Paul, > > On Mon, 17 Jan 2011 19:00:09 -0800 Paul Rigor wrote: > > > Hi gang, > > Just wondering if anyone has experienced some weird renderin

Re: [PyMOL] Malformed Selection Error when Measuring Dihedral Angle with Measurement Wizard

2011-01-18 Thread Jason Vertrees
Hi Doug, This was a bug in the v1.3 of PyMOL. The fix was posted to the open-source project a while ago. Until the next release, the easiest way to correct this bug is to replace your PYMOL_HOME/modules/pymol/wizard/measurement.py with the file from SVN (http://pymol.svn.sourceforge.net/viewvc/p

[PyMOL] Malformed Selection Error when Measuring Dihedral Angle with Measurement Wizard

2011-01-18 Thread Doug Renfrew
Searched the archive could find anyone else having this problem. I am unable to use the measurement wizard to measure dihedral angles using MacPyMOL Education version 1.3. Opening the wizard and clicking on the four atoms produces the following output... You clicked /1f5a//A/PHE`410/CG Selector

Re: [PyMOL] Rendering issues with education version 1.3

2011-01-18 Thread Robert Campbell
Hi Paul, On Mon, 17 Jan 2011 19:00:09 -0800 Paul Rigor wrote: > Hi gang, > Just wondering if anyone has experienced some weird rendering issues, ie, > aberrant bonds between atoms. I've attached a sample pdbqt file which > contains 4 molecules which are outputs of autodock vina. Can someone try