Re: [PyMOL] align

2010-11-29 Thread Jason Vertrees
Hi David, On Mon, Nov 29, 2010 at 10:33 AM, David A. Horita wrote: > Hi - a couple align questions: > 1.  How do I get a listing of which atoms are used for alignment/RMSD > calculation when aligning one molecule to another via the align to molecule > pulldown (especially if they're different pr

[PyMOL] align

2010-11-29 Thread David A. Horita
Hi - a couple align questions: 1. How do I get a listing of which atoms are used for alignment/RMSD calculation when aligning one molecule to another via the align to molecule pulldown (especially if they're different proteins) 2. Is it possible to write an alignment script, e.g., align mol2 a