Re: [PyMOL] small molecule geometry gets whacked in creating multi-state object. rebuild?

2010-11-10 Thread Jason Vertrees
On Wed, Nov 10, 2010 at 8:55 AM, Robert Campbell wrote: > So, you need to do: > > load this_ligand, all_lig, discrete=1 > load next_ligand, all_lig, discrete=1 Great point, Robert. In PyMOL when you load without specifying the discrete flag or set it to zero, any series of states is considered a

Re: [PyMOL] Increase number of digits in Measurement

2010-11-10 Thread Marius Retegan
set label_digits, 3 On Wed, Nov 10, 2010 at 3:50 PM, Martin Hediger wrote: > Dear all > Is it possible to increase the number of digits displayed when measuring > the distance between two atoms? > > Thanks > Martin > > > > > > -

[PyMOL] Increase number of digits in Measurement

2010-11-10 Thread Martin Hediger
Dear all Is it possible to increase the number of digits displayed when measuring the distance between two atoms? Thanks Martin -- The Next 800 Companies to Lead America's Growth: New Video Whitepaper David G. Thomson

Re: [PyMOL] Stereo issues on Mac Pro with Quadro FX 4800

2010-11-10 Thread Schubert, Carsten [PRDUS]
Chris, I don't know much about MACs, but on Linux you can have a look at /var/log/xorg.?.log or some similar log file. Take a look at the equivalent log file. May be there is some clue as to why the emitter won't work. Looks to me like a driver issue. Good luck, Carsten > -Original

Re: [PyMOL] small molecule geometry gets whacked in creating multi-state object. rebuild?

2010-11-10 Thread Robert Campbell
Hi Seth, On Tue, 09 Nov 2010 22:54:59 -0500 Jason Vertrees wrote: > Hi Seth, > > I haven't seen that (in this scenario). Can you send me a few PDB examples? > > Cheers, > > -- Jason > > On Mon, Nov 8, 2010 at 10:13 PM, Seth Harris wrote: > > Hi all, > > I feel I should know this one. I hav

[PyMOL] Stereo issues on Mac Pro with Quadro FX 4800

2010-11-10 Thread Chris Richardson
Dear All, I'm trying to get stereo working in PyMOL with the following setup: - Mac Pro (early 2010, MacPro 5,1) running 10.6.4 - Quadro FX 4800 for Mac - nVidia drivers Retail_256.00.05a23 - nVidia Pro emitter and glasses set connected by DIN and USB cables - ViewSonic Fuhzion VX2268WM, refresh