As a short follow up on my previous message: it appears to be possible to
adjust the sphere quality for pseudoatom objects independently from the
structure. Hopefully somebody will find this information useful (I know I did
:-) ).
fetch 2kqt
pseudoatom pseudo, pos=[0,0,-12]
show spheres, pseud
cd "test space"
A nice way is,To Push down the TAB key(maybe need several times) after
inputing "test",the left will try complete all.
> cd test
Cheers
Message: 1
> Date: Mon, 20 Sep 2010 11:20:10 -0400
> From: "David A. Horita"
> Subject: [PyMOL] cd in windows
> To:
> Message-ID:
>
My apologies- having never written a pymol script in my life,
it never occurred to me that your "cd" was a pymol command.
All my examples were from the DOS shell.
Still it may be helpful that the DOS 8.3 (Progra~1) names work.
You can get the short name of your directory by DIR/x
(from the dos she
Thanks for the replies/suggestions. Looks like I may need to upgrade from
v1.1, but:
cd \"program files", "\program files", and \program?files give a variant of
PyMOL>cd \"program files"
Traceback (most recent call last):
File "C:\Program Files\DeLano Scientific\PyMOL/modules\pymol\externing.
David A. Horita wrote:
> Hi,
> How does one change directories in Windows when the directory name has a
> space in it? I've tried double and single quotes as well as backslash
> space (I'd like to run a script that's in such a directory).
> Thanks
> David
These all work for me:
>cd \"program file
David,
Use double quotes or start typing and autocomplete with the
key.
Cheers.
On 9/20/2010 11:20 AM, David A. Horita wrote:
Hi,
How
does one change directories in Windows when the directory
Hi,
How does one change directories in Windows when the directory name has a
space in it? I've tried double and single quotes as well as backslash
space (I'd like to run a script that's in such a directory).
Thanks
David
-
David A. Horita, Ph.D.
Department of Biochem
Hi Martin,
> atoms within less than VdW distance. Is there an easy, very low-level, PyMOL
> way of fixing this? Can the sculpting wizard be used for this?
Yes, after you place the sidechain and have the new structure (via the
"apply" function) you can then apply sculpting. It would look
somethi
Dear All
Just one little thing, say I obtain a couple of rotamers by mutating a
sidechain. It happens that some of them are sterically not favourable,
i.e. atoms within less than VdW distance. Is there an easy, very
low-level, PyMOL way of fixing this? Can the sculpting wizard be used
for thi
