I'm beginning to see things.
When I issue:
for value in rot_lib[('ASP', 40, -100)]:
rl.write(str(value) + '\n')
rot_lib is being initiated by
rot_lib =
pickle.load(open("/Applications/PyMOLX11Hybrid.app/pymol/data/chempy/sidechains/sc_bb_dep.pkl",'r'))
I get the following output:
{('N'
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> Dear All,
>
> I am running APBS 1.1.0. via the "APBS Tools2" plugin on Pymol 1.3 (either on
> Linux or Vista).
> As usual i fetch a pdb structure and then do a "set grid" and then "run APBS".
> This works fine for most of the proteins I am working on, however I found out
> that in some of the p
Hi Sean,
Thanks for posting this. I also encountered and took note of this bug
when making the figures for your script.
Cheers,
-- Jason
On Mon, Sep 13, 2010 at 4:55 PM, Sean Law wrote:
> Hi PyMOLers,
>
> I think there is a bug in PyMOL regarding the "set cartoon_transparency"
> setting. Acc
It appears that PyMOL is writing out an improperly-formated PDB file here
(the coordinate sections do not start at the correct columns). I'm looking
into it.
Thanks,
-Michael
On Tue, Sep 14, 2010 at 10:42 AM, Afonso Duarte wrote:
>
> Dear All,
>
> I am running APBS 1.1.0. via the "APBS Tools2"
