[PyMOL] Cannot compile

2010-06-29 Thread Sergey Ivanov
Cannot compile neither by pyton-like style (python setup.py build install) nor by general gnu case ./configure; make; make install In 1st case i obtained: modules/cealign/src/ccealignmodule.H:70: error: ‘PyObject’ was not declared in this scope in 2nd case: "Cmd.c:88:21: error: ce_types.h: No suc

Re: [PyMOL] Rebuild

2010-06-29 Thread Jason Vertrees
Hi Mark, The surface representation of a protein, in PyMol, shows the "Connolly" surface or the surface that would be traced out by the _surfaces_ of waters in contact with the protein at all possible positions. Also, since PDBs don't have hydrogens, and PyMOL will calculate the surface for whate