Re: [PyMOL] Atom selection based on Hydrogen Bonding Partners

2010-05-10 Thread Michael Zimmermann
I suppose you could modify this script to show sticks when you find a H-bond pair. Delete the parts that make the dashed line and label and replace them with "show sticks" or add them to a selection. http://www.ebi.ac.uk/~gareth/pymol/downloads/scripts/hbond.py Not the nicest solution, but maybe

Re: [PyMOL] Stereoscopic visualization

2010-05-10 Thread Sabuj Pattanayek
Hi, On Sun, May 9, 2010 at 11:16 AM, Emiliano Ippoliti wrote: > Dear Users, > > in my University I have an hardware system formed by: > > 1 - PC with Nvidia Quadro FX 4800 graphics card. > 2 - 64-bit Operating system Windows 7 Professional > 3 - Projector ACER H5360 DLP 720P (3D ready) connected

Re: [PyMOL] Autodock plugin

2010-05-10 Thread Daniel Seeliger
Hi, no, I'm not planning to develop a solution without the dependency of autodocktools. The plugin is just a tool to use autodock and vina from within a pymol session. The Autodocktools are used for receptor and ligand preparation which is an essential part of a docking protocol, equally import