Re: [PyMOL] animating symmetry

2010-03-11 Thread Jason Vertrees
Harry, Here's how I would do it. Load the original object. Create a duplicate of it. Next, create your symmetry mates. Align the duplicate to the symmetry mate of choice. Create a blank movie (eg. mset 1x120, or Movie > Append > 4 Seconds). Now, store the original object's position at frame

Re: [PyMOL] what function creates the bonds?

2010-03-11 Thread Nicolas Bock
Hi Jason, thanks for the reply. I was assuming that the load function works something like this: def load(): load_xyz() create_bonds() I take it from your comments that what I called "create_bonds()" is not directly accessible? Or possibly not all contained in one function call? nick On W

Re: [PyMOL] how to make coordinates???

2010-03-11 Thread Tsjerk Wassenaar
Hi Mohan Raj, > i am new to pymol. i dont know how the coordinates are made in pdb file. This is not really related to Pymol. Maybe you should go to www.rcsb.org/pdb and have a look around. > cold someone tell me? how do we arrive at the coordinates from crystal > structure. Do you mean from a

[PyMOL] how to make coordinates???

2010-03-11 Thread mohan raj
Dear All: i am new to pymol. i dont know how the coordinates are made in pdb file. cold someone tell me? how do we arrive at the coordinates from crystal structure. cold we change the coordinated of the existing pdb file? also cold any one tell me how to introduce a substrate? eg when i am view