[PyMOL] stereo rotation lost with draw command

2010-02-05 Thread Norbert Straeter
I want to render a stereo image using the "draw" command instead of ray tracing. Unfortunately, the stereo rotation is lost with the command and the image is flat. If this is not a bug, is there a way to change this behaviour? Norbert Straeter --

Re: [PyMOL] draw the axes

2010-02-05 Thread Jason Vertrees
There's also: http://pymolwiki.org/index.php/Axes Just use the bounding box code for your boundaries. -- Jason On Fri, Feb 5, 2010 at 1:25 PM, Michael Zimmermann wrote: > go to: > http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/ > > and check out showaxes.py > you can edit the Cylinder com

Re: [PyMOL] New Ideas

2010-02-05 Thread Sean Law
Is it possible to include a function that could easily add or delete states (from the beginning, middle, or end of a set of states)? Something with the following syntax: delete_states 14 #Deletes state 14 delete_states 10-20 #Delete states 10-20 d

Re: [PyMOL] draw the axes

2010-02-05 Thread Michael Zimmermann
go to: http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/ and check out showaxes.py you can edit the Cylinder commands to place the axes where you want them, if not the origin. On Fri, Feb 5, 2010 at 3:35 AM, peter hudson wrote: > Hello all > > I am working on a proetin having different domai

Re: [PyMOL] draw the axes

2010-02-05 Thread Pierre Rizkallah
Hi Peter, I have just been doing a similar exercise. The answer is to introduce two new atoms and draw a bond between them: 1. Choose two points along one of the dimensions (x, y or z) that would be the limits of the axis you want to draw. 2. Use the equation of the axis (vector) to calculate th

[PyMOL] draw the axes

2010-02-05 Thread peter hudson
Hello all I am working on a proetin having different domains. I would like to make movie and draw some axis on my structure which represent the axis of libration and translation. Movie would present the domain conformation changes and its relevence with biology. I checked on the pymol wiki but i f