Paola,
True, PyMOL doesn't write secondary structure to PDB files, but it does save
the current in both PyMOL sessions as well as in PKL (Python Pickle) files.
load $TUT/1hpv.pdb
as cartoon
alter chain A, ss='S'
alter chain B, ss='H'
rebuild
save example.pkl, 1hpv
delete all
load
On Tue, Jul 21, 2009 at 12:23 PM, Paola Beassoni wrote:
> Dear Pymol Users,
> i am working with some pdb files with no secondary structures assignments
> embedded on it. Then when i try to see my molecules on cartoon diagrams, i
> see the secondary structure different to another programs, VMD for
There are problems in display window of pymol in ubuntu 9.04. The one
that I install from repository completely blocks the CPU. When I
compile the latest one on my machine (version 1.2b6pre), the display
window does not show up most of the time. The commands buttons do not
show up all the time.
Ha
Dear Pymol Users,
i am working with some pdb files with no secondary structures assignments
embedded on it. Then when i try to see my molecules on cartoon diagrams, i
see the secondary structure different to another programs, VMD for example.
I used the command alter (for example alter 10-34/, ss='
