set surface_mode, 1
Cheers,
Warren
> -Original Message-
> From: chaix denis [mailto:ch...@cbs.cnrs.fr]
> Sent: Tuesday, May 26, 2009 3:55 PM
> To: pymol-users@lists.sourceforge.net
> Cc: Chaix Denis; support; pymol-users@lists.sourceforge.net
> Subject: [PyMOL] surface of ligand
>
> Dear
Dear users
How can I obtain the surface of a ligand in protein pdb file.
I just need the simple surface, i doesn't need in this case, the
electrostatic surface.
Thanks
--
CHAIX Denis
PHD student
Centre de Biochimie Structurale
INSERM U554/CNRS 5048
29 rue de Navacelles
F-34090
Hmm... let's see if this works!
> -Original Message-
> From: David Hall [mailto:dwash59_2...@yahoo.com]
> Sent: Tuesday, May 26, 2009 3:07 PM
> To: Warren DeLano; pymol-users
> Subject: Re: [PyMOL] The List Archive is Back!
>
>
> is it possible to put a link to these archives in the sign
is it possible to put a link to these archives in the signature portion of the
mailing list? I would find that very helpful.
-David
- Original Message
> From: Warren DeLano
> To: pymol-users
> Sent: Tuesday, April 28, 2009 11:52:28 PM
> Subject: [PyMOL] The List Archive is Back!
>
I'm trying to examine electrostatics for an RNA molecule. I've
calculated an electrostatics map using Qnifft (which outputs the map as
a .phi file). I can read the .phi file into PyMol and color my
molecular surface using the map. What I'm hoping to do is
quantitatively determine the pot
Sean,
You can save some time & a lot of memory by loading the file and
removing the atoms in a single-line compound statement (with a semicolon
after the load statement).
load 1E3M.pdb; remove not A-C+F//
Cheers,
Warren
From: Sean Law [mailto:magic
Hi PyMOLers,
I was wondering if there is a way to load part of a PDB file if you know a
priori what you want thereby saving time/memory?
Currently, I have a system that is ~160,000 atoms (protein-DNA complex with
explicit water molecules taken from an MD simulation). When I load more than
10
