[PyMOL] importing in scripts

2009-04-24 Thread Bradley Hintze
I am trying to import a BioPython module into a pymol script but pymol can' find it. When I import it from the DOS>python command line it imports fine. Obviously pymol isn't looking in the right place for the module. Is there a way to force pymol to look in the right place? -- Bradley J. Hintze B

[PyMOL] align; atom list

2009-04-24 Thread Jason Rife
When aligning two structures using the align function is there an easy way of generating the list of atoms kept for the final refinement? Thanks, Jason P. Rife, Ph. D. Associate Professor Mail: P.O Box 980133 Department of Medicinal Chemistry Virginia Commonwealth University Richmond, VA 2329

Re: [PyMOL] rms_cur, rms, fit - No atoms selected

2009-04-24 Thread Albert Solernou
Thanks!! Now it works!! albert En/na Warren DeLano ha escrit: > (Sorry if this is dupe -- my email client is acting up...) > > the rms_* and fit commands required that the atoms in each selection to have > matching identifiers: such as chain, resi, segi, resn, etc. You can use the > "alter" c