Re: [PyMOL] plugins for MacPyMOL?

2009-01-30 Thread Warren DeLano
Matt, Please note that we have not taken anything away! MacPyMOL simply is not (and has never been a Tcl/Tk/Tkinter)-based application in its default configuration. To run it as an X11-based Tcl/Tk: First, make sure that X11 is installed and launched. Then make a copy of MacPyMOL and r

[PyMOL] plugins for MacPyMOL?

2009-01-30 Thread Matthew O'Meara
Hi, We have created a wizard that we would like to distribute, however a fair number of our users will be using the MacPyMOL version. It seems that the Plugin menu has been disabled as well as running scripts from the "file->run..." menu. Also plugin scripts dropped by hand into the modules/pmg_t

[PyMOL] Surface Residues

2009-01-30 Thread QT
Dear all, Once again, I need some help from pymol experts. I would like to select surface residues via the surface calculation algorithm of Pymol. Is this possible? What is the surface calculation algorithm that Pymol use and is it scattered among many source-code files or is it contained in ju

Re: [PyMOL] Showing conserved residues

2009-01-30 Thread Donnie Berkholz
On 13:10 Thu 29 Jan , Abhinav Kumar wrote: > Is there someway to select and show conserved residues when a bunch of > superimposed structures are loaded into Pymol? > And if so, can identical and similar residues be selected separately? I often use ConSurf, which will give you a PDB with a co