Sure. Done.
It is now in the open-source code, and it will be present in version 1.2
builds.
-Original Message-
From: pymol-users-boun...@lists.sourceforge.net
[mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Matthew
O'Meara
Sent: Thursday, September 11, 2008 10:24 AM
To
Pietro,
Below is an example script demonstrating how to create low-resolution
structure "blobs" using PyMOL:
load $TUT/1hpv.pdb, inp
remove not polymer
alter all, b=50
alter all, q=1
set gaussian_resolution,4
map_new mapA, gaussian, 1, inp and chain A, 6
isosurface surfA, mapA
set gaussian_res
Christian,
That limitation was fixed ages ago, spaces in commands such as:
./pymol -d 'help selections'
should work fine with any recent unix-based PyMOL build, open-source or
commercial.
Cheers,
Warren
--
DeLano Scientific LLC
Subscriber Support Services
mailto:supp...@delsci.com
-Origin
Ben,
P-Ser and P-Try aren't currently built in to PyMOL. You could of course
build the chemistry up atom by atom using the builder, but the resulting
atom names wouldn't match standard PDB conventions.
Cheers,
Warren
--
DeLano Scientific LLC
Subscriber Support Services
mailto:supp...@delsci
Rens,
All atoms should be clickable, provided that you're displaying one of the
clickable representations: lines, spheres, sticks, ribbon, label, cartoon,
nonbonded, and nb_spheres.
If it isn't working, then there could be an issue with the graphics card.
Be sure to check that you are running in
