[PyMOL] Secondary structure coloring

2007-10-10 Thread Omar Davulcu
Hi everyone, I've noticed that in some PDB files, not all, when I attempt to color a piece of secondary structure, like a helix, only one side will be colored and the underside is grey. I've even noticed that if I load two different PDB files in the same session, one will color both sides and

Re: [PyMOL] succinct secondary structure 'readout'

2007-10-10 Thread Tsjerk Wassenaar
Hi Frieda, I had to rewrite the script to get the output desired, now also using a class definition :p It works fine for me: PyMOL>@../..\ss.pml PyMOL>class SSList:\ PyMOL>list = []\ PyMOL>def purge( self, resi, ss ):\ PyMOL>if not self.list or self.list[-1][0] != ss:\ PyMOL>self.list.append( [ss