Re: [PyMOL] Protein Movie

2006-10-20 Thread Noinaj
ashutosh, disclaimer: i am probably not the best person to give advice about this, but you might check out the morph server. http://www.molmovdb.org/molmovdb/morph/ i am assuming that you have two pdb files that differ only the helix/sheet that you are interested in trying to create the mor

[PyMOL] Grasp Surface Properties

2006-10-20 Thread Anthony Armstrong
Hi Folks, Hoping some kind soul might be able to help me out on a problem that's been stumping me for some time. I'm trying to display a surface colored according to shape complementarity. I create a Grasp surface file for my ligand, use the ccp4 program sc to write shape complementarity values

Re: [PyMOL] Protein Movie

2006-10-20 Thread Jason T Maynes
Use the translate command to move selected parts of the protein. There are lots of posts in the archives for more info. Cheers, JTM "We can be sure that if a detailed understanding of the molecular basis of chemo-therapeutic activity were to be obtained, the advance of medicine would be greatly

[PyMOL] Protein Movie

2006-10-20 Thread Ashutosh Mishra
Hi, Can some body help me in making a movie in which only one helix/sheet in the protein is moving while rest of the molecule remain static. Thanks a lot ashutosh

[PyMOL] to access more color in pymol

2006-10-20 Thread shivesh kumar
Dear all, How can I use Setting-Edit all option for more color...on double clicking the color,what happens,it never comes to the color list nor in the working place.Thanx in advance. Shivesh