[PyMOL] chain transparency

2006-08-04 Thread Narender Singh Maan
Deal Users, Is there any way to change the transparency of just one chain in a multichain protein? Whenever i select it and try to changes the transparency, it do so for the the whole structure. Any suggestions would be of great help. thanxs nar

[PyMOL] Kensington Laser Wireless Mouse

2006-08-04 Thread Mark A Saper
Has anyone successfully used this relatively new mouse with MacPyMol. The middle button is a bit screwed up. Sometimes when I click it, it seems to activate the scroll, and widens the slab. But then the scroll wheel doesn't work. Something very strange. This happens with or without the

[PyMOL] Loop smoothing problem

2006-08-04 Thread Martin Singleton
Hi All, I'm having some problems with the cartoon_smooth_loops setting in the latest release of PyMol. It seems to have inconsistent effects with different session files. Sometimes it works fine, other times not at all (i.e. the loops do not change) and occasionally superimposes smoothed loops ove

Re: [PyMOL] rejected atoms during alignment

2006-08-04 Thread Marc Bruning
the problem in this case is to recognize the rejected atoms by eye, if you align about 400 c-alphas with average RMSDs of 0.2A. a printable list would be more helpful. but i guess this is not possible. but thanks a lot for your answer. On Thursday 03 August 2006 17:25, you wrote: > This is not