Hello all,
I am a new PyMOL user trying to prepare figures for publication. I'm confused
about the difference between the isomesh level of the 'mesh' in PyMOL and the
contour level of the electron density map that I read in from CCP4. For
example, for one of my figures I created a 3sigma Fo
On Fri, 2006-07-07 at 11:22 -0400, Nalam, Madhavi wrote:
> Hello,
> How do I draw a hydrogen bond between two atoms in PyMol?
Please see:
http://www.rubor.de/bioinf/tips_modeling.html
http://www.rubor.de/bioinf/pml/hbond1.pml
http://www.rubor.de/bioinf/pml/hbond2.pml
http://www.rubor.de/bioinf/pm
Hello,
How do I draw a hydrogen bond between two atoms in PyMol?
Thanks in advance,
Madhavi
In my experience, animated gifs run beautifully in web browsers on all
platforms and in openoffice under linux.
They are usually awful in powerpoint on any platform.
(And to be honest I don't really notice the lack of color depth.)
Alternatively, MPEGs tend to run well in powerpoint, but are tro
On Thu, Jul 06, 2006 at 10:14:33AM -0500, Scott P Brown wrote:
> That's not a very helpful response, as it may not be clear how
> one maps an atom selection in Pymol to the corresponding line
> in a PDB file.
Helfpulness is in the eye of the beholder. I certainly
intended, and still expect, that
My vote is against animated-GIFs. I have experienced problems with animated
GIFs in the past where they seem to run fine on my computer, then not work
properly (very slow) on a laptop during a presentation, etc. Could be that
I am setting them up wrong, but for this reason, I avoid animated-GI
Hi Petro,
run expects a python script (.py), whereas you're trying to run a
pymol script (.pml). For that you nead '@':
@c:\pict.pml
Cheers,
Tsjerk
On 7/6/06, Piter_ wrote:
Hi all
I have some errors if I run script:
PyMOL>run c:\pict.pml
Traceback (most recent call last):
File "C:\Progr
