Sorry, wrong thread.
This should be my answer to laura's question about different sphere size.
Too excited to be of a little help here.
Tiger
From: "Geng Tian"
To: pmar...@ualg.pt
CC: pymol-users@lists.sourceforge.net
Subject: RE: [PyMOL] saving files in pymol
Date: Sat, 15 Apr 2006 05
Hi, Paulo:
I hope these entries from my old pml file might help you:
select c11, resi 11 and chain c
show sphere, c11
alter c11, vdw=vdw*0.2
select c124, resi 124 and chain c
show sphere, c124
alter c124, vdw=vdw*2
Tiger
From: Paulo Martel
CC: pymol-users@lists.sourceforge.net
Subject:
Hi, there:
The problem was temporarily solved by putting each monomer in a separated
file and load into pymol. Hiding the two residues doesn't work. The weird
linkage will just jump to the next residues.
Thank you all.
Tiger
From: "Noinaj"
To: "Tsjerk Wassenaar"
,
Subject: Re: [PyM
Hello,
one thing I find a little bit annoying: the "save" command in Pymol will
accept any of ., and if the is unknown,
it will simple save a pdb file. While some people may find this a useful
feature, I think it is quite dangerous. For instance, suppose
I'm trying to save "work.pse" and mista
Hello,
I need to have spheres or dots of different sizes on a RNA ribbon. We are
trying to show that residues modify at a smaller or larger extent. So, I need to
have at different places differently sized spheres.
Hopefully I was explicetly enough.
Thank you,
Laura
Laura Dutca
Tsjerk,
Nice point, and probably easier to just create new objects in Pymol.
nick
- Original Message -
From: Tsjerk Wassenaar
To: pymol-users@lists.sourceforge.net
Sent: Friday, April 14, 2006 4:29 AM
Subject: Re: [PyMOL] question about ca trace
Hi Tiger,
Nick is
FYI: all.
This is a bug that has been fixed in the source and will not occur with future
releases.
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
. 400 Oyster Point Blvd., Suite 213
. South San Francisco, CA 94080 USA
Hi Tiger,
Nick is largely right. The cause for the link to show up is that pymol just
traces through all c-alphas in the object, regardless of chains or
distances. So, selecting the linked residues and hiding the trace should
solve your problem. Also, creating two files will do the trick.
Alternat
