RE: [PyMOL] PyMOL in CAVE

2006-03-14 Thread Warren DeLano
Just as an FYI: DeLano Scientific LLC has no plans to support a CAVE-enabled version of PyMOL. However, a 3rd-party could perhaps create one using the open-source code. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Poi

[PyMOL] building peptides

2006-03-14 Thread Alan
Hello List, I would like to have any help. I want to build several 3-peptides, like AAA, FFF, KKK etc. I also would like to make them zwitterionics, add chain and save as a PDB file. I know how to do that using the graphic interface, but I what I am looking for is a way to do it via pymol script

Re: [PyMOL] PyMOL in CAVE

2006-03-14 Thread Tsjerk Wassenaar
Hi Joe Zhou, Wow, four times CAVE in four lines of text :) I'm not completely sure, but I thought we had (have) a CAVEable version of Pymol here. You could contact Frans van Hoesel ( F.H.J.van.Hoeselremoving-the-usual-junk at rug.nl ). He will surely know. Cheers, Tsjerk On 3/13/06, Joe Zhou w

[PyMOL] Surface Vertex Coordinates

2006-03-14 Thread Ewgenij Proschak
Hello everybody, I am interested in the coordinates of the vertices of the mesh representation of the molecular surface. Is there any method to read them out? Thanks Ewgenij