Siv,
I'd recommend adding CONECT records to your PDB file to explicitly
connect the atoms -- PyMOL will honor those, and you should see pretty
much what you described. Note that PyMOL cannot draw a cartoon well
without the amide backbone being present.
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Mark,
A syntactic gotcha: Python tuples require a comma even if there is only
one element:
Tuple ('joe_closed',) is distinct from expression ('joe_closed') which
just equals 'joe_closed'
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
Why does this work:
from pymol import cmd
cmd.set_key ('CTRL-A', cmd.hide, ('sticks', 'joe_closed' ) )
and this doesn't?
from pymol import cmd
cmd.set_key ('CTRL-A', cmd.disable, ('joe_closed') )
_
Mark A. Saper, Ph.D.
Associate
Hi Siv,
It's possible, but requires some python programming. If you're atom sequence
is like CA, CB, CA, CB it shouldn't be to hard... (unfortunately I don't
have time now :S sorry).
Tsjerk
On 3/1/06, Siv Midtun Hollup wrote:
>
> Hi,
>
> I have pdb files with c alpha coordinates and a centroid
Hi,
I have pdb files with c alpha coordinates and a centroid coordinate set
for each residue, and I'd like to make a ball-and-stick model where all
the c alpha atoms are connected like a backbone, and the
centroids are connected to the appropriate c alpha atom. Can this be
done in pymol, and if s
Le Mardi 28 Février 2006 21:10, Joel Tyndall a écrit :
> Hi all,
>
> I'm not sure if this has been asked before and I'm not sure if its
> possible...but here goes anyway. Is there a way to print/export the
> sequences in the viewer window? It would be an easy way to translate
> actual secondary str
Le Mardi 28 Février 2006 21:10, Joel Tyndall a écrit :
> Hi all,
>
> I'm not sure if this has been asked before and I'm not sure if its
> possible...but here goes anyway. Is there a way to print/export the
> sequences in the viewer window? It would be an easy way to translate
> actual secondary str
