[PyMOL] viewing multi-sdf files

2006-02-15 Thread Joel Tyndall
Hi folks, hopefully an easy solution but how do I read all the molecules (scroll thru) in a multi-sdf file or mol file. I have tried the split states command but that only reads the first molecule. Any help would be appreciated. J -- Joel Tyndall, PhD Lecturer National School of Pharmacy U

Re: [PyMOL] ball-and-sticks, controlling bond color

2006-02-15 Thread Matthew . Franklin
pymol-users-ad...@lists.sourceforge.net wrote on 02/15/2006 05:36:51 PM: > Hi all, > > There is a beautiful ball-and-stick image on pymol-wiki that I am > trying to replicate (http://www.pymolwiki.org/index.php/Ball_and_Stick). > > The wiki image has grey bonds and light blue balls for carbon, dar

[PyMOL] Pymol 0.99 stereo on SGI Fuel

2006-02-15 Thread Ken Satyshur
Pymol 0.99 stereo works well on our system in the Med school. SGI Fuel, R16K MIPS V12 graphics board, C220 Dimandtron Monitor Stereographics Z-Screen Monitor Cover, and $20 glasses. kas -- Kenneth A. Satyshur, M.S., Ph.D. Associate Scientist,Department of Bacteriology University of Wiscosin, Mad

[PyMOL] ball-and-sticks, controlling bond color

2006-02-15 Thread Yoder, Marilyn
Hi all, There is a beautiful ball-and-stick image on pymol-wiki that I am trying to replicate (http://www.pymolwiki.org/index.php/Ball_and_Stick). The wiki image has grey bonds and light blue balls for carbon, dark blue for nitrogen, and red balls for oxygen. My problem is that all my bonds an

[PyMOL] PyMOL/O stereo 3D on G5 Quad with Quadro FX 4500

2006-02-15 Thread Luca Jovine
Dear PyMOL & O users, This is just a short feedback note to let you know that the stereo 3D feature of recent builds of both programs works really well with the following combination: Apple PowerMac G5 Quad with NVIDIA Quadro FX 4500 card Philips 202P73 22" CRT monitor