[PyMOL] apbs color ligand by potential using pml script

HI everyone I have been able to show electrostatics from APBS by loading the .dx map using a pml script. However, I would really like to display it on the surface similar to the apbs plugin option which says "color by potential on solvent accessible surface" in the visualization menu. Does anyone k

[PyMOL] nucleic acid cartoon problem?

Hi, I came across a possible (and maybe debatable) problem with RNA cartoons: With default settings (i.e. cartoon_nucleic_acid_mode = 0, so the ribbon goes through P's), the "rungs" or sticks in the ladder representation don't always intersect with the backbone ribbon. In other words, sometimes t

RE: [PyMOL] getting pov-ray temp files

Thanks Tsjerk, I still have the same issue of PyMOL aborting on me: RayRenderPovRay: processed 2956434 graphics primitives. VLAExpand-ERR: realloc failed. EEK! PyMOL just ran out of memory and crashed /usr/local/pymol/pymol.com: line 14: 3812 Aborted So I guess I really need t