RE: [PyMOL] Where can I find the definition of class Atom and Bond ?

2005-12-19 Thread Warren DeLano
modules/chempy/__init__.py -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 .

Re: [PyMOL] Re: PyMOL-users digest, Vol 1 #1085 - 5 msgs

2005-12-19 Thread Michael George Lerner
It's broken at the moment. I'm working on a new version. It should be out asap. -- www.umich.edu/~mlerner |_ |Michael Lerner This isn't a democracy;| ASCII ribbon campaign ( ) | Michigan it's a cheer-ocracy. | - against HTML email X | Biophysics -Torrence, Bri

[PyMOL] Re: PyMOL-users digest, Vol 1 #1085 - 5 msgs

2005-12-19 Thread aaron . b . miller
Hello, Has anyone gotten the new apbs-0.4.0 to work with the apbs_tools.py plugin script? It doesn't seem to be working for me. My guess is that there are new parameters needed in the input file for 0.4.0 that are not created correctly by the plugin script. I have used the older version (0.3

[PyMOL] points under surface

2005-12-19 Thread Martin Weisel
Dear pymol users. Is there an easy way to determine whether a point (represented by its x,y,z-coordinates) lies under the surface or not? Any help would be appreciated. Regards, Martin --- Martin Weisel Diploma Student Department of Bioinformatics Frankfurt University -- 10 GB Mailbox, 100 Fr