Dear Users,
I was wondering does anyone know how to get nice APBS generated
electrostatic surfaces in MacPyMOL. I know the APBS plugin can't/
won't work in MacPyMOL so I guess it's a question of what do I do
with the output from APBS (I assume it's the dx file) to get a
surface in MacPyMOL
> This is awesome. It looks like this has been a valid setting
> for a *long* time, but I've never seen it. I look at a lot
> of MCSS-type structures, and I have some really painful
> scripts that get the bonds right once the structure is loaded
> in PyMOL. Now, I can just stamp the CONECT r
Dmitry,
VMD may have the ability to shift and recombine the molecule relative to
the periodic boundary in order to avoid this dismembered effect, whereas
currently PyMOL does not. I believe ptraj can do this for you, though
it has been ages since I have tried using PyMOL with Amber.
Cheers,
Warr
Hi,
I have a prloblem with viewing AMBER trajectory files, specifically,
the topology appears messed up. When I load the trajectory into the
topology object, the structure shows up dismembered into eight pieces
on the vertices of a cude. I should note that I can load an AMBER
coordinate f
