Thanks Renato.
My distribution is Ubuntu. But, what I want is independent of distribution.
There's a default font being used by Pymol and I want to change it,
like you do in nedit, for instance.
Cheers,
Alan
On 14/10/05, Joao Renato Carvalho Muniz wrote:
> Hey Alan
>
> What's your linux distro
Has anyone done anything with with making PyMol able to display pharmacophores
as CGOs? Being able to align molecules in pymol with a defined pharmacophore
would be nice too, but I realize that doing that would require much more effort
from some developer. For the time being, it would be good t
Hi all,
this script below runs well in pymol. It loads pdb files and
calculates the distance of some atoms contained in the fileAmb whose
format is:
26,O11:HN
28,*:HE1
...
With * I select whole ligand (segi B) and pymol returns only one
value, the average distance for all atoms to the H
Hi,
Works great for me!
Very nice to have access to the system python.
gilleain torrance
On 14 Oct 2005, at 16:50, Warren DeLano wrote:
For cutting-edge Mac users, there is a new MacPyMOL for Tiger that
integrates into a single window and links to the system Python instead
of bringing its ow
For cutting-edge Mac users, there is a new MacPyMOL for Tiger that
integrates into a single window and links to the system Python instead
of bringing its own copy (in part this is necessary preparation for
Intel...).
http://delsci.com/beta
Please let me know how it works for you!
Cheers,
Warren
Which parts are missing? Looks fine to me...
Although the pdb file has some horrible features. Some residues are
multiply defined (eg 170 in chain H) and there is some kind of poly-
calcium binding tail in chain L.
gilleain torrance
On 14 Oct 2005, at 10:43,
wrote:
Hi everybody
I am
Hello,
I defined some default colors in the $HOME/.pymolrc file.
E.g.: set cartoon_color, slate
It works fine but in PyMOL viewer (version 0.98) I cannot change the
color for rendering modes I defined.
The one I defined is always kept.
Is this a normal behavior ?
Thanks
--
Sébastien Morett
Hi everybody
I am getting quite desperate! For some strange reason PyMol do not
display certain areas (several loops) of my .pdb file (1DAN) when in
cartoon display mode. When I display the structure in "lines" or
"sticks" everything is ok. Other pdb-viewers dont have this problem with
the same .pd
