Hi,
The last line in your script needs to be something like:
cmd.pair_fit("/" + model + "///30-35/CA", "/template///289-294/CA")
or, more compactly:
cmd.pair_fit("/%s///30-35/CA" % model, "/template///289-294/CA")
this will expand the 'model' variable correctly to whatever it was
s
Hi,
I'm trying to write a script to load a series of model peptides and
superimpose them to a template structure.
The part that actually loads the models and superimpose them looks like
this:
for i in range(1,100):
model = 'model.pdb.' + str(i)
cmd.load(model)
cmd.hide(
Hi all,
is there any way to calculate the angle between the axis-protein and a
surface membrane?
thanks
regards,
andrea
Beginning today, I get a blank screen when I load a pdb file. The program
seems to be running correctly. The file is "loaded", I can even select
atoms in the file. But the atoms are not displayed on the screen (as
lines, sticks, spheres, etc.).
I tried installing a new pymol version with the same r
Sometimes when I am typing commands on PyMol's top
window all my view suddenly "zooms out" without any
reason. It seems to happens mostly when I have written
or pasted big commandas on that windows and try to
edit them hitting the shift+left arrow or shift+home.
This is particularly annoying when I
