Re: [PyMOL] question on cctbx and pymol

2005-08-22 Thread Sabuj Pattanayek
Hi, Thank you for replying. In fact this is what I did. Gentoo automatically compiles pymol (pymol ebuild) with all required dependencies against the system-wide python-2.4.1. I then manually installed cctbx, did "source /usr/lib64/python-2.4/site-packages/setpaths_all.csh" and "source /usr/

RE: [PyMOL] Re: Using CMYK color space

2005-08-22 Thread rgb
On Mon, August 22, 2005 2:55 pm, Warren DeLano said: > > Hold on -- from the end-user's standpoint, the only thing that matters > is: "does the image I see on the screen match what comes out of the > printer". Who cares about the "printer's point of view"?! The printer (a person running the press

Re: [PyMOL] question on cctbx and pymol

2005-08-22 Thread Robert Campbell
Hi, * Sabuj Pattanayek [2005-08-18 16:08] wrote: > Actually I was wondering the same thing, except how to set it up in > linux. I was able to compile the cctbx but I'm not sure how to get it to > show up as a python module so that Pymol scripts (e.g. Dr. Campbell's > draw_cell.py) can work. An

[PyMOL] small molecule bond valences, revisited

2005-08-22 Thread Seth Harris
Hi all (again!), Warren, I know I half brought this up at the user's meeting but I can't remember if there was a clear answer...so maybe it means not yet, but didn't recall that either. Question: is there a way to preserve small molecule bond valence information? Background: I know pymol has som

[PyMOL] cursor arrows for rotamers vs movies

2005-08-22 Thread Seth Harris
Hi Warren et al., Thanks very much, Warren, for the rotamer libraries and mutagenesis wizard. I am very attached to cycling through rotamers using the cursor arrow keys. However if I have a movie set up, it takes precedence of the cursor key bindings, and right arrow steps through movie frames le

RE: [PyMOL] Re: Using CMYK color space

2005-08-22 Thread Warren DeLano
> > Hi Pymol'rs, > > > > I have search the Wiki and Mail-list archive to find a protocul for > > using the CMYK color space, but have only found > "color-safe" definitions. > > > > My Question(s): > > > > When do you define the color space during the creation of a > figure to > > ensure usage o

Re: [PyMOL] Re: [o-info] KVM purchasing advice

2005-08-22 Thread Cameron Mura
Hi Joe and other KVM users, Not to revive too old of a thread (see emails below), but I thought you or some others might like to know what final KVM solution I settled upon for a mixture of windows and linux boxes. I initially tried the common Belkin OmniView SOHO 4-port KVM switch (PS/2 con

[PyMOL] Re: Using CMYK color space

2005-08-22 Thread rgb
On [2005-Aug-19] Christopher Colbert wrote: > > Hi Pymol'rs, > > I have search the Wiki and Mail-list archive to find a protocul for using > the CMYK color space, but have only found "color-safe" definitions. > > My Question(s): > > When do you define the color space during the creation of a figu