[PyMOL] volume approximation

2005-08-04 Thread ormus cama
hi, i am looking for some advice. i would like to create a set of overlapping spheres whose combined volume approximates the actual volume of a protein of interest. obviously, i am looking for a reduced representation. ideally, i am talking about no more than a handful of spheres. these spheres

RE: [PyMOL] comments ?

2005-08-04 Thread Warren DeLano
That's by design...we can't allow calling of Python from p1m files. -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 .

Re: [PyMOL] sessions and movies

2005-08-04 Thread Nadine Atwood
Hi, Thank you for your reply, Joel. I have followed that advice, downloaded v0.98 and tried using the scene function, but I didn't mention yesterday that I load and delete several dozen *.pdb files during the original movie and this appears to be a problem as the scene function does not restor

Re: [PyMOL] comments ?

2005-08-04 Thread Sebastien Moretti
Just for the sake of the uninitiated What are .p1m files and how do they differ from regular .pml files. I took a quick look at Sebastians file and it looked pretty much like a regular .pml file to me. Cheers, .p1m files are web oriented. With them, you can embedded whole structures

RE: [PyMOL] comments ?

2005-08-04 Thread Schubert, Carsten [PRDUS]
Just for the sake of the uninitiated What are .p1m files and how do they differ from regular .pml files. I took a quick look at Sebastians file and it looked pretty much like a regular .pml file to me. Cheers, Carsten -Original Message- From: Ezequiel H Panepucci [mailto:

Re: [PyMOL] comments ?

2005-08-04 Thread Sebastien Moretti
Yes -- this is a bug -- thanks for pointing it out. Cheers, Warren It seems that the 'print "..."' commands is unrecognized in p1m files too. But, '#' doesn't work in p1m file. Error: unrecognized keyword: #second The # line involves an error but the script goes on. I think ind