Re: [PyMOL] sessions and movies

2005-08-03 Thread Joel Tyndall
Hi Nadine, To answer the first part, there is a much easier way...use the scene function in 0.98 version. This allows you to jump between individual "screenshots". You can then save this as a .psw file and view it as full screen or embed it in powerpoint. (See my previous post "Pymol scenes to

[PyMOL] showing van der waals radius for atoms in pymol

2005-08-03 Thread Rongjin Guan
Dear pymol-users, I want to show close contacts (or stereo clashes) in protein-ligand complex by showing the overlapped van der waals radius sphere (not CPK mode). Can pymol do this? if, how? Thanks Rongjin Guan

[PyMOL] sessions and movies

2005-08-03 Thread Nadine Atwood
Hi, I have come across a problem that I cannot find a way around and would greatly appreciate some help. I have made a movie showing several protein models and numerous distances to illustrate residue interactions in different structures. This movie is rather long, and I wanted to make a very

Re: [PyMOL] Pymol sessions

2005-08-03 Thread Tsjerk Wassenaar
Hi John, I've never met this problem, and have saved very large session files. Which version are you using? Tsjerk On 8/3/05, John Whitlow wrote: > > I've been loading the results of my docking runs, which are > > multi-hundred SD files, into pymol and saving the session for > > use in colabora