[PyMOL] APBS help

2005-07-14 Thread surendra negi
Hi, I am trying to run APBS. I have compiled the software and it is working.. But after few second later i am getting following error message. I guess there is some problem with map file. Any solution or help? Thanks in advance sn == This PyM

[PyMOL] Problem with Installation of PyMOL 0.98 on WinXP Pro SP2

2005-07-14 Thread Brian A. Canada
Hi everyone, I am trying to install PyMOL 0.98 on my machine, but when I click on SETUP.EXE, I get the following error message, in a dialog box that reads "16-bit Windows Subsystem.": "C:\WINDOWS\SYSTEM32\AUTOEXEC.NT. The system file is not suitable for running MS-DOS and Microsoft Windows applic

[PyMOL] tube thickness

2005-07-14 Thread Alexandra Deaconescu
Dear all, Is there a way to adjust the cartoon tube thickness in Pymol? I have tried using cartoon_tube_radius but it does not seem to work. I am using MacPymol version 0.95. Thank you very much in advance, Alexandra

[PyMOL] rms values for several states

2005-07-14 Thread Daniel Hasenpusch
Hi, I made Molecular Dynamics studies on a wildtype enzyme and its mutants. To compare the structures (in pymol 40 states for each enzyme) I have to find out which state of the one enzyme has the best rms to the other enzyme. Are there possibilities to solve this problem in pymol or maybe in p